Chromatin accessibility of circulating CD8⁺ T cells differentiates disease severity in IgA nephropathy
  • Kim, Gwanghun
  • Lee, Soojin
  • Lee, Soojin
  • Shin, Suk-Kyung
  • Park, Sehoon
  • ... Cho, Semin
  • 외 9명
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Immunoglobulin A (IgA) nephropathy (IgAN) is a prevalent primary glomerulonephritis with progressive potential. Early identification of high-risk patients is critical; however, current clinical and pathological markers are limited. This study aimed to identify epigenetic biomarkers in circulating CD8⁺ T cells that discriminate IgAN patients with different disease severity. Seventeen patients with biopsy-proven IgAN were stratified into early- and late-stage groups based on kidney function. CD8⁺ T cells were isolated and analyzed using transposase-accessible chromatin sequencing (ATAC-Seq) to assess chromatin accessibility. Differentially accessible regions (DARs) were identified and selected biomarkers were additionally analyzed with ATAC-qPCR. In total, 279 DARs were identified, of which 122 were selected as stage-specific biomarkers. CD8⁺ T cells from the early-stage group exhibited higher chromatin accessibility, and t-SNE showed a clear separation between the stages. Deconvolution analysis revealed the enrichment of naïve CD8⁺ T cells in the early-stage group and terminally differentiated effector memory CD8⁺ T cells in the late-stage group. Motif analysis uncovered distinct regulatory signatures: ETS1, LEF1, and RUNX2 in the early-stage, EOMES, TBX21, and IRF4 in the late stage. Receiver operating characteristic (ROC) analysis showed strong discriminatory power of the top biomarkers, enhanced by a composite weighted score. ATAC-qPCR confirmed the chromatin accessibility patterns observed using ATAC-Seq. This study defined stage-specific chromatin landscapes in the circulating CD8⁺ T cells of patients with IgAN and identified non-invasive epigenetic biomarkers associated with different disease severity, which may be utilized in early risk stratification and personalized management. © 2025. The Author(s).

키워드

BiomarkersCD8⁺ T cellsChromatin accessibilityChronic kidney diseaseIgA NephropathyTRANSCRIPTION FACTORSEXPRESSIONEXHAUSTIONINFECTIONPERFORINSUBSETS
제목
Chromatin accessibility of circulating CD8⁺ T cells differentiates disease severity in IgA nephropathy
저자
Kim, GwanghunLee, SoojinLee, SoojinShin, Suk-KyungPark, SehoonKoh, Jung HunCho, SeminKim, YaerimKim, Ik SooLee, Seung JaeSeo, ChaehwaLee, Dong-SupKim, Hang-RaeShin, Hyun MuKim, Dong Ki
DOI
10.1038/s41598-025-31213-9
발행일
2025-12
유형
Article
저널명
Scientific Reports
16
1

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